Bacterial taxon 909946
Locus STM474_3537
Protein WP_001241377.1
RNase E specificity factor CsrD
Salmonella enterica Serovar Typhimurium ST4 74
Length 646 aa, Gene yhdA, UniProt E8XD80
>WP_001241377.1|Salmonella enterica Serovar Typhimurium ST4 74|RNase E specificity factor CsrD
MRLTTKFSAFITLLTGLTIFVTLIGCSLSFYNAVQYKYVSRVQATATAIDTHLVTHDIVSLTPQIDELMIASDIVRVDLLQGERSVYSHSRARGYRPAGTSDMYRELVVPLIKHPGMSLRLAYQDPMGNYFHSLITTAPLTLAIGFIVLILFLSVRWLQRQLSGQELLEIRSTRILNGERGANVRGSVYEWPARTSSALDVLLSEIQFAHEQRSRLDTLIRSYAAQDTKTGLGNRLFFDNQLATLLEDQEKVGVHGVVMMIRLPDFNLLRDSLGGNQAEEQMFMLINLLSTFIMRYPGSLLARYHRSDFAVLLPHRTLKEAESIAGQLLKAVDALPANKMLDRDDMVHIGICAWRSGQSTEQVMEHAEAAARNAALQGGNSWAIYDDTLPEKGRGNVRWRTLIEQMLNRGGPRLYQKPAVTREGRVHHRELMCRIYDGKEEVSSAEYMPMVLQFGLSEEYDRLQISRLITLLGYWPDENLAMQLTVESLIRPRFQRWLRDTLMQCEKSQRNRIIIELAEADVCQHISRLQPILRLVNALGVRVAVTQAGLTLVSTSWIKALNVELLKLHPSLVRNIEKRTENQLLVQSLVEACAGTPTQVYATGVRSRGEWQTLTKRGVAGGQGDFFASSQLLDTNVKKYSQRYSV
| Host |
Tissue |
Tissue Ontology |
Time Post Infection |
Transposon Insertion Site |
Raw Fitness Score |
p-Value |
Fitness z-Score |
Precise fitness z-Score |
Reference |
| Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 3,566,579 | -1.32 | 0.62 | ●○○○○ -0.51 | -0.506921804909418 | 23637626 |
| Cow (Bos taurus) | ileal mucosa | BTO:0000619 | 4 days | 3,566,902 | -0.67 | 0.23 | ●○○○○ -0.17 | -0.172906514736638 | 23637626 |
| Cow (Bos taurus) | ileal mucosa | BTO:0000619 | 4 days | 3,566,850 | -0.47 | 0.55 | ●○○○○ -0.07 | -0.0658208157779687 | 23637626 |
| Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 3,566,902 | -0.01 | 1 | ○○○○○ 0.17 | 0.169736277113073 | 23637626 |
| Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 3,567,552 | 0.03 | 1 | ○○○○○ 0.19 | 0.193727283169047 | 23637626 |
| Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 3,566,850 | 0.36 | 0.94 | ○○○○○ 0.37 | 0.366573774787348 | 23637626 |
| Pig (Sus scrofa) | colonic mucosa | BTO:0000271 | 3 days | 3,566,902 | 0.6 | 0.66 | ○○○○○ 0.49 | 0.488711712305371 | 23637626 |
| Pig (Sus scrofa) | colonic mucosa | BTO:0000271 | 3 days | 3,566,579 | 0.64 | 0.63 | ○○○○○ 0.51 | 0.50832254742954 | 23637626 |
| Cow (Bos taurus) | ileal mucosa | BTO:0000619 | 4 days | 3,567,552 | 0.65 | 0.4 | ○○○○○ 0.52 | 0.516181230664303 | 23637626 |
| Cow (Bos taurus) | ileal mucosa | BTO:0000619 | 4 days | 3,566,569 | 0.81 | 0.31 | ○○○○○ 0.6 | 0.600183709590254 | 23637626 |
| Cow (Bos taurus) | ileal mucosa | BTO:0000619 | 4 days | 3,566,579 | 0.92 | 0.22 | ○○○○○ 0.65 | 0.653946820956296 | 23637626 |
| Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 3,566,569 | 0.98 | 0.75 | ○○○○○ 0.68 | 0.683515456161548 | 23637626 |
| Pig (Sus scrofa) | colonic mucosa | BTO:0000271 | 3 days | 3,567,552 | 1.92 | 0.42 | ○○○○○ 1.18 | 1.17555166313222 | 23637626 |
| Pig (Sus scrofa) | colonic mucosa | BTO:0000271 | 3 days | 3,566,850 | 2.66 | 0.18 | ○○○○○ 1.56 | 1.56030720949183 | 23637626 |
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