Bacterial taxon 909946
Locus STM474_3004
Protein WP_014344400.1
type III secretion system YopJ family effector AvrA
Salmonella enterica Serovar Typhimurium ST4 74
Length 301 aa, Gene avrA, UniProt E8XKZ3
>WP_014344400.1|Salmonella enterica Serovar Typhimurium ST4 74|type III secretion system YopJ family effector AvrA
MIFSVQELSCGGKSMLSPTTRNMGASLSPQPDVSGELNTEALTCIVERLESEIIDGSWIHISYEETDLEMMPFLVAQANKKYPELNLKFVMSVHELVSSIKETRMEGVESARFLVNMGSSGIHISVVDFRVMDGKTSVILFEPAACSAFGPALALRTKAALEREQLPDCYFAMVELDIQRSSSECGIFSLALAKKLQLEFMNLVKIHEDNICERLCGEEPFLPSDKADRYLPVSFYKHTQGAQRLNEYVEANPAAGSSIVNKKNETLYERFDNNAVMLNDKKLSISAHKKRIAEYKSLLKP
| Host |
Tissue |
Tissue Ontology |
Time Post Infection |
Transposon Insertion Site |
Raw Fitness Score |
p-Value |
Fitness z-Score |
Precise fitness z-Score |
Reference |
| Pig (Sus scrofa) | colonic mucosa | BTO:0000271 | 3 days | 3,032,902 | -6.4 | 6.5e-7 | ●●●●○ -3.15 | -3.14633230601217 | 23637626 |
| Cow (Bos taurus) | ileal mucosa | BTO:0000619 | 4 days | 3,032,902 | -1.16 | 0.041 | ●○○○○ -0.43 | -0.426393301033696 | 23637626 |
| Cow (Bos taurus) | ileal mucosa | BTO:0000619 | 4 days | 3,032,895 | 2.17 | 0.0053 | ○○○○○ 1.3 | 1.30310536147781 | 23637626 |
| Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 3,032,902 | -1.46 | 0.31 | ●○○○○ -0.58 | -0.580675699707248 | 23637626 |
| Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 3,032,895 | 1.13 | 0.66 | ○○○○○ 0.76 | 0.763734398089184 | 23637626 |
| Pig (Sus scrofa) | colonic mucosa | BTO:0000271 | 3 days | 3,032,895 | 2.17 | 0.51 | ○○○○○ 1.3 | 1.30365992416769 | 23637626 |
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