Bacterial taxon 909946
Locus STM474_3085
Protein WP_000029738.1
CRISPR-associated helicase/endonuclease Cas3
Salmonella enterica Serovar Typhimurium ST4 74
Length 887 aa, Gene ygcB, UniProt E8X8M4
>WP_000029738.1|Salmonella enterica Serovar Typhimurium ST4 74|CRISPR-associated helicase/endonuclease Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
Host |
Tissue |
Tissue Ontology |
Time Post Infection |
Transposon Insertion Site |
Raw Fitness Score |
p-Value |
Fitness z-Score |
Precise fitness z-Score |
Reference |
Pig (Sus scrofa) | colonic mucosa | BTO:0000271 | 3 days | 3,108,387 | -6.5 | 2.2e-7 | ●●●●○ -3.2 | -3.19666332454104 | 23637626 |
Pig (Sus scrofa) | colonic mucosa | BTO:0000271 | 3 days | 3,108,424 | -6.13 | 1.0e-5 | ●●●●○ -3 | -3.0047383821146 | 23637626 |
Cow (Bos taurus) | ileal mucosa | BTO:0000619 | 4 days | 3,108,424 | -4.53 | 3.9e-13 | ●●●○○ -2.18 | -2.17756675375446 | 23637626 |
Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 3,108,424 | -2.81 | 0.014 | ●●○○○ -1.28 | -1.28457957982557 | 23637626 |
Cow (Bos taurus) | ileal mucosa | BTO:0000619 | 4 days | 3,108,387 | -2.54 | 5.1e-7 | ●●○○○ -1.14 | -1.14312753894193 | 23637626 |
Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 3,108,387 | -1.41 | 0.34 | ●○○○○ -0.55 | -0.554583979392868 | 23637626 |
Cow (Bos taurus) | ileal mucosa | BTO:0000619 | 4 days | 3,107,042 | -0.82 | 0.12 | ●○○○○ -0.25 | -0.248169488782902 | 23637626 |
Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 3,107,042 | 0.39 | 0.94 | ○○○○○ 0.38 | 0.38044071020962 | 23637626 |
Pig (Sus scrofa) | colonic mucosa | BTO:0000271 | 3 days | 3,107,042 | 1.24 | 0.59 | ○○○○○ 0.82 | 0.822935858395952 | 23637626 |
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(Link to these results)