Bacterial taxon 909946
Locus STM474_0243
Protein WP_001021054.1
lysine decarboxylase LdcC
Salmonella enterica Serovar Typhimurium ST4 74
Length 713 aa, Gene ldcC, UniProt E8XIQ4
>WP_001021054.1|Salmonella enterica Serovar Typhimurium ST4 74|lysine decarboxylase LdcC
MNIIAIMGPHGVYYKDEPIKELERALQSLGFQIIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSEINQLNEYLPLYAFINTNSTLDVSVHDMRMALWFFEYALGLAEDIATRIHQYTNEYLDNITPPFTKALFTYAKEGKYTFCTPGHMAGTAYQKSPPGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPRREFTRASIESKIEETPQAQWPVHAVITNSTYDGLLYNTNWIKQMLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGDRVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASIETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDSWFFDIWQPEEVDEAECWPVTPGETWHGFTDADDDHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQHDLPGLMLRAFEVLPEMIMTPHQAWQRQIKGEVETVALDQLPGRVSANMILPYPPGVPLLMPGERITQQSRAVLDFLLMLCSIGQHYPGFETDIHGAKRNEDGVYQVRVLKHAC
Host |
Tissue |
Tissue Ontology |
Time Post Infection |
Transposon Insertion Site |
Raw Fitness Score |
p-Value |
Fitness z-Score |
Precise fitness z-Score |
Reference |
Cow (Bos taurus) | ileal mucosa | BTO:0000619 | 4 days | 276,316 | 1.8 | 0.011 | ○○○○○ 1.11 | 1.11166533177 | 23637626 |
Pig (Sus scrofa) | colonic mucosa | BTO:0000271 | 3 days | 277,023 | -0.02 | 1 | ○○○○○ 0.17 | 0.166428056416629 | 23637626 |
Cow (Bos taurus) | ileal mucosa | BTO:0000619 | 4 days | 277,023 | 0.19 | 0.82 | ○○○○○ 0.27 | 0.273421037444074 | 23637626 |
Cow (Bos taurus) | ileal mucosa | BTO:0000619 | 4 days | 276,311 | 0.22 | 0.73 | ○○○○○ 0.29 | 0.288972958032759 | 23637626 |
Pig (Sus scrofa) | colonic mucosa | BTO:0000271 | 3 days | 276,316 | 0.26 | 0.85 | ○○○○○ 0.31 | 0.313037334949975 | 23637626 |
Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 276,316 | 0.29 | 0.98 | ○○○○○ 0.33 | 0.325668138787395 | 23637626 |
Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 276,311 | 0.47 | 0.93 | ○○○○○ 0.42 | 0.418658492648748 | 23637626 |
Pig (Sus scrofa) | colonic mucosa | BTO:0000271 | 3 days | 277,995 | 0.52 | 0.71 | ○○○○○ 0.45 | 0.445851980691906 | 23637626 |
Pig (Sus scrofa) | colonic mucosa | BTO:0000271 | 3 days | 276,311 | 0.75 | 0.62 | ○○○○○ 0.57 | 0.568243734838452 | 23637626 |
Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 277,995 | 0.88 | 0.78 | ○○○○○ 0.63 | 0.633858782859868 | 23637626 |
Chicken (Gallus gallus) | cecum | BTO:0000166 | 4 days | 277,023 | 0.92 | 0.81 | ○○○○○ 0.66 | 0.657179959649487 | 23637626 |
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